PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016439162.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 233aa    MW: 26465.1 Da    PI: 9.6892
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016439162.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.95.6e-233181151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+ien++ rq t+skR+  i KKA+EL vLCd++va+++fs+tg+l  yss
  XP_016439162.1 31 KKIENSTSRQQTYSKRKDSIVKKANELAVLCDTDVALLMFSPTGQLTSYSS 81
                    68***********************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.3012383IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-292382IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-252499IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-202545IPR002100Transcription factor, MADS-box
PROSITE patternPS0035002579IPR002100Transcription factor, MADS-box
PfamPF003191.7E-213279IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-204560IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-206081IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MHFSVRRRTT THLTSSSSLH PLMGRNKLVM KKIENSTSRQ QTYSKRKDSI VKKANELAVL  60
CDTDVALLMF SPTGQLTSYS SRGSVEDIML RVVNRPGELH RRPIPNEQHF SQRLTQLKYE  120
SEMVEKIAIA EAHEEKLNKL NQRLSEAREN IRYYEPQVEY INSVREAVAC QQFLMGAMGR  180
IQQLKAKLLG GEVLQRNENV EVASVNAEDT AATANGSSSS NPNWYLTSVY ISF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016439162.11e-174PREDICTED: agamous-like MADS-box protein AGL66 isoform X1
TrEMBLA0A0V0HT182e-79A0A0V0HT18_SOLCH; Putative MADS-box protein defh21-like
STRINGSolyc07g052700.2.12e-65(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52921836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77950.21e-29AGAMOUS-like 67